BLOSpectrum tools
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Find the BLOSpectrumbetween two sequences
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18.215.185.97_23-01-2021
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http://blospectrumtool.sourceforge.net
Splitting the BLOSUM score into numbers of biological significance
SCOP Family Fingerprints: An Information Theoretic
Approach to Structural Classification of Protein Domains
Interfaccia web per uno strumento di classificazione proteica
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These tools work with fasta file.The databases and sequences must be in fasta format.
Example of a database in fasta format:
>d2e1ea1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]} qpvisaqeqetqivlygklvearqkhankmdvppailatnkilvdmakmrpttvenvkri dgvsegkaamlapllevikhfcqtnsvqtdlfss >d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]} qpvisaqeqetqivlygklvearqkhankmdvppailatnkilvdmakmrpttvenvkri dgvsegkaamlapllevikhfcqtnsvqtdlfss >d1go3f_ a.60.8.2 (F:) RNA polymerase II subunit RBP4 (RpoF) {Archaeon Methanococcus jannaschii [TaxId: 2190]} migkkilgeryvtvseaaeimynraqigelsyeqgcaldylqkfakldkeeakklveeli slgidektavkiadilpedlddlraiyykrelpenaeeileivrkyi >d1go3n_ a.60.8.2 (N:) RNA polymerase II subunit RBP4 (RpoF) {Archaeon Methanococcus jannaschii [TaxId: 2190]} igkkilgeryvtvseaaeimynraqigelsyeqgcaldylqkfakldkeeakklveelis lgidektavkiadilpedlddlraiyykrelpenaeeileivrkyi >d1y14a_ a.60.8.2 (A:) RNA polymerase II subunit RBP4 (RpoF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} elialnlsearlvikealverrrafkrsqkkhkkkhlkhenandettavededddldedd vnaddddfmhsetrekelesidvlleqttggnnkdlkntmqyltnfsrfrdqetvgaviq llkstglhpfevaqlgslacdtadeaktlipslnnkisddelerilkelsnletly >d1y14c_ a.60.8.2 (C:) RNA polymerase II subunit RBP4 (RpoF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} elialnlsearlvikealverrrafkrsqkkhkkkhlkhenandettavededddldedd vnaddddfmhsetrekelesidvlleqttggnnkdlkntmqyltnfsrfrdqetvgaviq llkstglhpfevaqlgslacdtadeaktlipslnnkisddelerilkelsnletly >d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]} eedasqlifpkefetaetllnsevhmllehrkqqnesaedeqelsevfmktlnytarfsr fknretiasvrslllqkklhkfelaclanlcpetaeeskalipslegrfedeelqqildd iqtkrsfqy >d2c35c1 a.60.8.2 (C:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]} eedasqlifpkefetaetllnsevhmllehrkqqnesaedeqelsevfmktlnytarfsr fknretiasvrslllqkklhkfelaclanlcpetaeeskalipslegrfedeelqqildd iqtkrsfqy >d2c35e1 a.60.8.2 (E:14-139) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]} eedasqlifpkefetaetllnsevhmllehrkqqnesaedeqelsevfmktlnytarfsr fknretiasvrslllqkklhkfelaclanlcpetaeeskalipslegrfedeelqqildd iqtkrs >d2c35g1 a.60.8.2 (G:14-139) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]} eedasqlifpkefetaetllnsevhmllehrkqqnesaedeqelsevfmktlnytarfsr fknretiasvrslllqkklhkfelaclanlcpetaeeskalipslegrfedeelqqildd iqtkrs >d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} vapedawrditnawqlrtrqlaclqlladwrlrkarerdlavnfvvreehlwsvarympg slgeldslglsgseirfhgktllalvekaqtlpedalpqpm >d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]} lnlmdmpgyrkafkaikslitdvsethkisaellasrrqinqllnwhwklkpqnnlpeli sgwrgelmaealhnllqeypq >d2hbja1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} kespwkilmyqynipperevlvrelyqwrdliarrddesprfvmpnqllaalvaytptdv igvvsltngvtehvrqnakllanlirdalrnikntn >d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} kespwkilmyqynipperevlvrelyqwrdliarrddesprfvmpnqllaalvaytptdv igvvsltngvtehvrqnakllanlirdalrnikntn >d2hbla1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} kespwkilmyqynipperevlvrelyqwrdliarrddesprfvmpnqllaalvaytptdv igvvsltngvtehvrqnakllanlirdalrnikntn >d2hbma1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} kespwkilmyqynipperevlvrelyqwrdliarrddesprfvmpnqllaalvaytptdv igvvsltngvtehvrqnakllanlirdalrnikntn >d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} kpiftdesylelyrkqkkhlntqqltafqllfawrdktarredesygyvlpnhmmlkiae elpkepqgiiaccnpvpplvrqqinemhlliqqarempllksevaagvkkssg >d1crxa1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]} sdevrknlmdmfrdrqafsehtwkmllsvcrswaawcklnnrkwfpaepedvrdyllylq arglavktiqqhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdage >d1crxb1 a.60.9.1 (B:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]} sdevrknlmdmfrdrqafsehtwkmllsvcrswaawcklnnrkwfpaepedvrdyllylq arglavktiqqhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdage >d1drga1 a.60.9.1 (A:21-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]} devrknlmdmfrdrqafsehtwkmllsvcrswaawcklnnrkwfpaepedvrdyllylqa rglavktiqqhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdage >d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]} sdevrknlmdmfrdrqafsehtwkmllsvcrswaawcklnnrkwfpaepedvrdyllylq arglavktiqqhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdage >d1kbua1 a.60.9.1 (A:18-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]} atsdevrknlmdmfrdrqafsehtwkmllsvcrswaawcklnnrkwfpaepedvrdylly lqarglavktiqqhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdage
Example of a sequence in fasta format:
>d2ioka1 a.123.1.1 (A:306-544) Estrogen receptor alpha {Human (Homo sapiens) [TaxId: 9606]} lalsltadqmvsalldaeppilyseydptrpfseasmmglltnladrelvhminwakrvp gfvdltlhdqvhllecawleilmiglvwrsmehpgkllfapnllldrnqgkcvegmveif dmllatssrfrmmnlqgeefvclksiillnsgvytflsstlksleekdhihrvldkitdt lihlmakagltlqqqhqrlaqlllilshirhmsnkgmehlysmkcknvvplydllleml